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Article: HLA Class II Antigens and Their Interactive Effect on Perinatal Mother-To-Child HIV-1 Transmission.

Full Text (publisher's website) ; Article Metadata ; Article Data (extracted)
Luo M; Embree J; Ramdahin S; Bielawny T; Laycock T; Tuff J; Haber D; Plummer M; Plummer FA
PLoS ONE, 2015


10.1371/journal.pone.0126068.t001 PCR and sequencing primers used for genotyping HLA class II genes.
name specificity primer sequence
DQB1
DQBDNAF 5'DQB1 (PCR forward primer) 5'-TCCCCGCAGAGGATTTCGTG-3'
DQBDNAR 3'DQB1 (PCR reverse primer) 5'-GGCGACGACGCTCACCTC-3'
DQBSEQ1 DQB1 Sequencing primer (sense) 5'-GCAGAGGATTTCGTGTTCCAG-3'
DQBSEQ3 DQB1 Sequencing primer (antisense) 5'-CCTTCTGGCTGTTCCAGTACTC-3'
DRB
DRBPRCF 5'-DRB 5'-GTTCGTGTCCCCACAGCACGTTTC-3'
DRBPCRR 3'-DRB 5'-CATGCTCACCTCGCCGCTGCAC-3'
DRBSEQ4 DRB (antisense) 5'-GAAGCTCTCACCAACCCCGTAG-3'
DRB01SEQ DRB1*01s 5'-TTGTGGCAGCTTAAGTTTGAA-3'
DRB031234SEQ DRB1*03s, 11s, 12s, 13s, 14s 5'-CACGTTTCTTGGAGTACTCTAC-3'
DRB04SEQ DRB1*04s 5'-CCTGGACAGATACTTCTATC-3'
DRB08SEQ DRB1*08s 5'-TTCTTGGAGTACTCTACGG-3'
DRB1516SEQ DRB1*15s, 16s 5'-CACGTTTCCTGTGGCAGCCTAAGA-3'
DRB3SEQ DRB3 5'-CCACAGCACGTTTCTTGGAGCT-3
DRB4SEQ DRB4 5'-GAGCGAGTGTGGAACCTGATC-3'
DRB5SEQ DRB5 and DRB1*09 5'-CACGTTTCTTGCAGCAGGA-3'
DRB86SEQ DRB with GTG at codon 86 5'-CTGCACTGTGAAGCTCTCAC-3'
DRB58SEQ DRB with GAG at codon 58 5'-AGCTGGGGCGGCCTGATGAG-3'
DRB26SEQ DRB with TAC at codon 26 5'-TGGGACGGAGCGGGTGCGGTA-3'
DPA1
DPAPCRF 5'DPA1 5’- ACATTTTGTCGTGTTTTTCTCT -3’
DPAPCRR 3'DPA1 5’- GTTGACCTTCCCTACTCTC -3’
DPASEQF DPA1 Sequencing primer (sense) 5’- GGCGGACCATGTGTCAACTTAT -3
DPASEQR DPA1 Sequencing primer (antisense) 5’- GCAAGGTTGGTGTGAGTCCG-3’
DPB1
DPBPCRF 5'DPB1 5’-GAGAGTGGCGCCTCCGCTCAT-3’
DPBPCRR 3'DPB1 5’-GCCGGCCAAAGCCCTCACTC-3’
DPBSEQF DPB1 Sequencing primer (sense) 5’- CCTCCCCGCAGAGAATTAC-3’
DPBSEQR DPB1 Sequencing primer (antisense) 5’-GAGGTGAGTGAGGGCTTTG-3’

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